Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000003552annotation not available (624 aa)    
Predicted Functional Partners:
ENSSTUP00000089229
NudC domain containing 1.
    
   0.615
LOC115203815
MOB kinase activator 1B.
    
 
 0.611
ENSSTUP00000058820
APC membrane recruitment protein 2.
    
 0.609
LOC115152263
APC membrane recruitment protein 2-like.
    
 0.609
ENSSTUP00000025075
Ribosomal protein S21.
    
   0.578
RPS21
Ribosomal protein S21.
    
   0.578
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
    
  0.572
LOC115204013
Actin-related protein 2/3 complex subunit 3-B.
    
   0.556
ENSSTUP00000078911
Actin related protein 2/3 complex, subunit 3.
    
   0.556
zgpat
Zinc finger CCCH-type and G-patch domain containing.
      
 0.552
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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