Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115202022Reticulon-4 receptor-like 2. (455 aa)    
Predicted Functional Partners:
ENSSTUP00000004813
Netrin g1a.
    
 0.656
LOC115170189
netrin-G1-like.
    
 0.656
LOC115195355
netrin-G1-like.
    
 0.656
LOC115157587
netrin-G1-like.
    
 0.656
LOC115205755
Elongation factor 1-gamma-like.
    
  0.647
LOC115166697
Elongation factor 1-gamma.
    
  0.647
LOC115198276
RING finger protein 227-like.
    
  0.581
LOC115150972
Macrophage-stimulating protein receptor-like.
    
  0.571
LOC115207569
Macrophage-stimulating protein receptor-like.
    
  0.571
LOC115152322
Hepatocyte growth factor receptor-like.
    
  0.571
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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