Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC115194644Ubiquitin carboxyl-terminal hydrolase 12-like. (383 aa)    
Predicted Functional Partners:
WDR48
WD repeat domain 48.
    
 0.929
WDR48-2
WD repeat domain 48.
    
 0.929
WDR48-3
WD repeat-containing protein 48-like.
    
 0.929
WDR20
WD repeat-containing protein 20.
    
 0.913
LOC115163184
WD repeat-containing protein 20-like.
    
 0.913
LOC115172905
WD repeat-containing protein 20-like.
    
 0.913
DMWD
WD repeat-containing protein 20-like.
    
 0.913
LOC115168644
WD repeat-containing protein 20-like.
    
 0.888
LOC115174521
WD repeat-containing protein 20-like.
    
 0.888
ENSSTUP00000076014
FA complementation group D2.
    
 0.848
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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