Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000004147F-box and leucine-rich repeat protein 13. (486 aa)    
Predicted Functional Partners:
ak8
Adenylate kinase 8.
     
 0.940
ENSSTUP00000006246
S-phase kinase-associated protein 1.
    
 0.913
ENSSTUP00000006263
annotation not available
    
 0.913
ENSSTUP00000056505
S-phase kinase-associated protein 1.
    
 0.913
LOC115159539
Adenylate kinase isoenzyme 1.
     
 0.866
LOC115204096
Adenylate kinase isoenzyme 1-like.
     
 0.866
ENSSTUP00000066292
Adenylate kinase 5.
     
 0.866
LOC115169709
Cullin-1.
    
 0.861
LOC115157067
Cullin-1-like.
    
 0.861
CUL1
Cullin-1-like.
    
 0.861
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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