Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115171390Protein transport protein Sec24B-like. (1191 aa)    
Predicted Functional Partners:
LOC115152745
Protein transport protein Sec31A-like.
   
 0.995
LOC115159235
Protein transport protein Sec31A-like.
   
 0.994
SEC31A
SEC31 homolog A, COPII coat complex component.
   
 0.994
ENSSTUP00000021303
SEC13 homolog, nuclear pore and COPII coat complex component.
   
 0.992
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
   
 0.992
LOC115162075
Protein transport protein Sec23A.
   
0.981
LOC115147271
Protein transport protein Sec23A.
   
0.981
LOC115178804
Protein transport protein Sec23A-like.
   
0.981
LOC115172351
Protein transport protein Sec23A-like.
   
0.981
ENSSTUP00000011007
annotation not available
   
0.980
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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