Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115192686Vacuolar protein sorting-associated protein VTA1 homolog. (314 aa)    
Predicted Functional Partners:
LOC115157690
Charged multivesicular body protein 5-like.
   
 0.985
CHMP5
Charged multivesicular body protein 5-like.
   
 0.985
LOC115195784
Charged multivesicular body protein 5.
   
 0.985
LOC115196883
Charged multivesicular body protein 1a-like.
   
 0.981
chmp1a
Charged multivesicular body protein 1A.
   
 0.981
LOC115149056
Charged multivesicular body protein 1b-like.
   
 0.981
LOC115154517
Charged multivesicular body protein 1b.
   
 0.981
LOC115201031
Charged multivesicular body protein 2a.
   
 0.971
LOC115158731
Charged multivesicular body protein 2a-like.
   
 0.971
LOC115196885
Vacuolar protein sorting-associated protein 4A-like.
   
 0.970
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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