Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000004483GRB10 interacting GYF protein 1a. (927 aa)    
Predicted Functional Partners:
LOC115147183
Trinucleotide repeat-containing gene 6C protein-like.
   
 
 0.882
LOC115178916
Trinucleotide repeat-containing gene 6C protein-like.
   
 
 0.882
LOC115197999
Eukaryotic translation initiation factor 4E type 2-like.
    
 
 0.871
eif4e2
Eukaryotic translation initiation factor 4E family member 2.
    
 
 0.871
ZNF598
E3 ubiquitin-protein ligase ZNF598-like.
    
 
 0.845
ENSSTUP00000100116
annotation not available
    
 
 0.845
ZNF598-2
E3 ubiquitin-protein ligase ZNF598-like.
    
 
 0.845
ENSSTUP00000023016
CCR4-NOT transcription complex, subunit 1.
   
 
 0.786
ENSSTUP00000028200
CCR4-NOT transcription complex, subunit 1.
   
 
 0.786
ddx6
DEAD-box helicase 6.
    
 
 0.755
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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