Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115208348Helicase with zinc finger domain 2-like. (2823 aa)    
Predicted Functional Partners:
ENSSTUP00000084555
Exosome component 8.
   
 0.957
ENSSTUP00000088588
Exosome component 10.
  
 0.955
ENSSTUP00000014610
Exosome component 5.
  
 0.954
exosc3
Exosome component 3.
   
 0.944
ENSSTUP00000008483
annotation not available
   
 0.943
YTHDC2
YTH domain containing 2.
   
 0.943
LOC115149378
Exosome RNA helicase MTR4-like.
   
 0.941
ENSSTUP00000033277
Mtr4 exosome RNA helicase.
   
 0.941
ENSSTUP00000074032
annotation not available
   
 0.927
ENSSTUP00000095911
5'-3' exoribonuclease 1.
   
 0.927
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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