Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115193432Early growth response protein 1-B-like. (447 aa)    
Predicted Functional Partners:
LOC115148477
Early growth response protein 1-like.
     
  0.769
LOC115205429
Early growth response protein 1-like.
     
  0.769
LOC115174700
Early growth response protein 1-like.
     
  0.769
LOC115153935
Early growth response protein 1-like.
     
  0.769
LOC115200671
Mitogen-activated protein kinase 1-like.
    
  0.765
MAPK1
Mitogen-activated protein kinase 1.
    
  0.765
LOC115170800
Mitogen-activated protein kinase 1-like.
    
  0.765
mapk7
Mitogen-activated protein kinase 7.
    
  0.713
fkbp9
FKBP prolyl isomerase 9.
    
 
 0.702
LOC115200104
Early growth response protein 3-like.
     
  0.679
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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