STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000005039annotation not available (322 aa)    
Predicted Functional Partners:
ddx58
DExD/H-box helicase 58.
    
 0.647
LOC115153309
ubiquitin-40S ribosomal protein S27a-like.
    
  0.591
rps27a
Ribosomal protein S27a.
    
  0.591
LOC115154315
polyubiquitin-C.
    
  0.566
ENSSTUP00000031566
annotation not available
    
  0.566
ENSSTUP00000105071
annotation not available
    
  0.566
ube2l3
Ubiquitin conjugating enzyme E2 L3.
    
  0.544
ENSSTUP00000056735
annotation not available
    
  0.530
ENSSTUP00000065171
annotation not available
    
  0.530
ENSSTUP00000082743
annotation not available
    
  0.530
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.