Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115202966Protein LTO1 homolog. (141 aa)    
Predicted Functional Partners:
yae1
YAE1 maturation factor of ABCE1.
   
 
 0.951
LOC115191787
ATP-binding cassette sub-family E member 1.
    
 
 0.895
ABCE1
ATP-binding cassette sub-family E member 1.
    
 
 0.895
ENSSTUP00000017294
Acireductone dioxygenase 1.
     
  0.800
LOC115201114
MMS19 nucleotide excision repair protein homolog.
    
 
 0.783
LOC115157635
MMS19 nucleotide excision repair protein homolog.
    
 
 0.783
ENSSTUP00000024051
APAF1 interacting protein.
     
  0.747
LOC115166786
Methylthioribulose-1-phosphate dehydratase-like.
     
  0.747
LOC115167493
Fibroblast growth factor 19-like.
      
 0.708
ENSSTUP00000006450
VPS11 core subunit of CORVET and HOPS complexes.
    
   0.699
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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