Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115149178coronin-1C-A-like. (1645 aa)    
Predicted Functional Partners:
LOC115162087
Cofilin-2.
   
 0.677
CFL1
Cofilin-2-like.
   
 0.677
LOC115204256
Cofilin-2-like.
   
 0.677
LOC115201757
Cofilin-2-like.
   
 0.677
LOC115155623
Cofilin-2-like.
   
 0.677
LOC115205241
Cofilin-2-like.
   
 0.677
LOC115172354
Cofilin-2-like.
   
 0.677
ENSSTUP00000013955
Intraflagellar transport 80 homolog (Chlamydomonas).
   
   0.676
ift57
Intraflagellar transport 57.
    
   0.664
dhfr
Dihydrofolate reductase.
    
 0.620
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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