Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000005646Transmembrane channel-like 2b. (767 aa)    
Predicted Functional Partners:
LOC115169571
Uncharacterized LOC115169571.
     
 0.769
LOC115167257
SPARC-like.
    
 0.666
LOC115165354
LHFPL tetraspan subfamily member 5 protein-like.
     
 0.622
LOC115151051
LHFPL tetraspan subfamily member 5 protein-like.
     
 0.622
ENSSTUP00000094713
Otolith matrix protein.
   
 
 0.597
LOC115196174
Otolith matrix protein 1.
   
 
 0.597
LOC115156771
Otolin-1.
      
 0.586
LOC115158477
Histone H2A deubiquitinase MYSM1-like.
    
  0.584
LOC115192420
Histone H2A deubiquitinase MYSM1-like.
    
  0.584
LOC115204962
Leucine-rich repeat-containing protein 51-like.
    
 0.580
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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