Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC115184921Retinol dehydrogenase 12-like. (328 aa)    
Predicted Functional Partners:
LOC115201984
Lecithin retinol acyltransferase-like.
    
 0.896
LOC115196890
Diacylglycerol O-acyltransferase 1-like.
   
 
 0.881
ENSSTUP00000102355
annotation not available
     
 0.880
LOC115197389
All-trans-retinol 13,14-reductase-like.
    
 0.868
LOC115201447
Inactive all-trans-retinol 13,14-reductase-like.
    
 0.868
ENSSTUP00000030469
annotation not available
    
 0.868
ENSSTUP00000053520
annotation not available
    
 0.868
pnpla4
Patatin like phospholipase domain containing 4.
     
 0.865
ENSSTUP00000109433
annotation not available
     
 0.865
LOC115198039
Lecithin retinol acyltransferase-like.
     
 0.833
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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