Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC115148564Ubiquitin-conjugating enzyme E2 B. (192 aa)    
Predicted Functional Partners:
fancm
FA complementation group M.
    
 0.936
LOC115206143
E3 ubiquitin-protein ligase TRIP12-like.
    
 0.934
ENSSTUP00000075842
Thyroid hormone receptor interactor 12.
    
 0.934
LOC115150525
E3 ubiquitin-protein ligase RAD18-like.
    
 0.931
rad18
RAD18 E3 ubiquitin protein ligase.
    
 0.931
LOC115168031
Ubiquitin-conjugating enzyme E2 variant 1.
    
 0.910
LOC115165686
Ubiquitin-conjugating enzyme E2 variant 1.
    
 0.910
ENSSTUP00000114788
Ubiquitin-conjugating enzyme E2 variant 1.
    
 0.910
hltf
Helicase like transcription factor.
    
 0.890
rad52
RAD52 homolog, DNA repair protein.
    
 0.890
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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