Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
TRMOtRNA (adenine(37)-N6)-methyltransferase-like. (490 aa)    
Predicted Functional Partners:
itpa
Inosine triphosphatase.
    
  0.747
LOC115196854
Heat shock factor-binding protein 1-like.
    
   0.705
ENSSTUP00000045943
annotation not available
    
   0.705
LOC115166699
Heat shock factor-binding protein 1-like.
    
   0.705
HSBP1
Heat shock factor-binding protein 1-like.
    
   0.705
dtymk
Deoxythymidylate kinase.
    
  0.699
cmpk2
Cytidine/uridine monophosphate kinase 2.
    
  0.699
tyms
Thymidylate synthetase.
    
  0.675
TYMS
Thymidylate synthetase.
    
  0.675
ENSSTUP00000113805
annotation not available
  
  
 0.668
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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