Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSSTUP00000006901Neuronal PAS domain protein 2. (811 aa)    
Predicted Functional Partners:
ENSSTUP00000097727
Cryptochrome circadian regulator 4.
    
 0.942
CRY2
Cryptochrome-2-like.
    
 0.941
CRY2-2
Cryptochrome-2-like.
    
 0.941
LOC115152056
Deoxyribodipyrimidine photo-lyase-like.
    
 0.941
LOC115197591
Cryptochrome-2-like.
    
 0.941
LOC115198085
Period circadian protein homolog 1-like.
    
 0.935
ENSSTUP00000017902
CLOCK-interacting pacemaker a.
    
 0.927
ENSSTUP00000019554
Cryptochrome circadian regulator 1b.
    
 0.927
LOC115183170
Cryptochrome DASH-like.
    
 0.927
LOC115152189
Cryptochrome-1-like.
    
 0.927
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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