STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000007631RAD23 homolog A, nucleotide excision repair protein b. (391 aa)    
Predicted Functional Partners:
xpc
XPC complex subunit, DNA damage recognition and repair factor.
   
 0.992
ngly1
N-glycanase 1.
    
 0.992
PSMD2
26S proteasome non-ATPase regulatory subunit 2-like.
    
 0.967
PSMD2-2
26S proteasome non-ATPase regulatory subunit 2.
    
 0.967
LOC115158477
Histone H2A deubiquitinase MYSM1-like.
   
 0.964
ENSSTUP00000015333
Proteasome 26S subunit, non-ATPase 8.
   
 0.964
LOC115154315
polyubiquitin-C.
    
 0.964
LOC115192420
Histone H2A deubiquitinase MYSM1-like.
   
 0.964
ENSSTUP00000031566
annotation not available
    
 0.964
ENSSTUP00000105071
annotation not available
    
 0.964
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.