Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115154262Protein phosphatase 1E-like. (615 aa)    
Predicted Functional Partners:
nme8
NME/NM23 family member 8.
   
 0.822
LOC115155393
Thioredoxin domain-containing protein 3 homolog.
   
 0.822
LOC115199723
Protein fem-1 homolog C-like.
  
 
 0.792
FEM1A
Protein fem-1 homolog A-like.
  
 
 0.792
fem1b
Fem-1 homolog B.
  
 
 0.792
LOC115164968
Protein fem-1 homolog C-like.
  
 
 0.792
LOC115169434
Protein fem-1 homolog A.
  
 
 0.792
LOC115152426
Protein fem-1 homolog B-like.
  
 
 0.792
LOC115198276
RING finger protein 227-like.
   
 0.757
camk4
Calcium/calmodulin dependent protein kinase IV.
    
 0.746
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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