Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC115171323Protein FAM234B-like. (724 aa)    
Predicted Functional Partners:
ENSSTUP00000076233
Actin binding Rho activating protein a.
      
 0.799
LOC115207353
PRELI domain containing protein 3B-like.
      
 0.683
PRELID3B
PRELI domain containing protein 3B-like.
      
 0.683
LOC115175613
Enhancer of filamentation 1-like.
      
 0.639
LOC115174093
Enhancer of filamentation 1-like.
      
 0.639
LOC115174148
Sodium-dependent lysophosphatidylcholine symporter 1-B-like.
      
 0.625
LOC115176302
Sodium-dependent lysophosphatidylcholine symporter 1-B-like.
      
 0.625
lnx1
Ligand of numb-protein X 1.
      
 0.623
LOC115158526
E3 ubiquitin-protein ligase LNX-like.
      
 0.623
atp6v0e1
ATPase H+ transporting V0 subunit e1.
      
 0.618
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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