Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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[Homology]
Score
LOC115152205Protein mono-ADP-ribosyltransferase PARP12-like. (668 aa)    
Predicted Functional Partners:
ENSSTUP00000089229
NudC domain containing 1.
    
   0.736
LOC115202972
RING finger protein 166-like.
    
   0.669
RNF166
Ring finger protein 166.
    
   0.669
ddx58
DExD/H-box helicase 58.
   
 
 0.630
aifm1
Apoptosis inducing factor mitochondria associated 1.
  
  0.607
ENSSTUP00000042373
annotation not available
   
 
  0.600
ENSSTUP00000062636
annotation not available
   
 
  0.600
ENSSTUP00000062796
annotation not available
   
 
  0.600
ENSSTUP00000062843
annotation not available
   
 
  0.600
ENSSTUP00000062858
annotation not available
   
 
  0.600
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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