Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115163846capZ-interacting protein-like. (347 aa)    
Predicted Functional Partners:
washc4
WASH complex subunit 4.
   
 
 0.870
LOC115159645
Vacuolar protein sorting-associated protein 29.
    
 
 0.834
ENSSTUP00000078970
VPS29 retromer complex component.
    
 
 0.834
ENSSTUP00000074460
WAS protein family homolog 1.
    
 
 0.830
LOC115152062
WASH complex subunit 1-like.
    
 
 0.830
LOC115180022
WASH complex subunit 3.
    
 
 0.824
LOC115180022-2
WASH complex subunit 3-like.
    
 
 0.824
LOC115187871
WASH complex subunit 5-like.
   
 
 0.822
LOC115187872
WASH complex subunit 5.
   
 
 0.822
LOC115202924
Vacuolar protein sorting-associated protein 35-like.
    
 
 0.798
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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