Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000009526annotation not available (189 aa)    
Predicted Functional Partners:
ENSSTUP00000055692
annotation not available
     
 0.878
casp7
Caspase 7.
    
 0.839
lmnb1
Lamin B1.
    
  0.832
lmnb2
Lamin B2.
    
  0.832
LOC115176110
lamin-A-like.
    
  0.832
parp4
poly(ADP-ribose) polymerase family member 4.
   
 
 0.826
parp2
poly(ADP-ribose) polymerase 2.
   
 
  0.824
dffa
DNA fragmentation factor subunit alpha.
     
  0.819
LOC115168036
Tubulin alpha-8 chain-like.
    
  0.814
LOC115165691
Tubulin alpha-8 chain-like.
    
  0.814
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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