Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000009976Zinc finger DHHC-type containing 4. (206 aa)    
Predicted Functional Partners:
smim20
Small integral membrane protein 20.
   
  
 0.707
zdhhc22
Zinc finger DHHC-type containing 22.
      
 0.689
LOC115162006
Vacuolar protein 8-like.
      
 0.626
zdhhc6
Zinc finger DHHC-type containing 6.
      
 0.626
nudcd3
NudC domain containing 3.
      
 0.614
LOC115153849
Cytochrome c oxidase assembly factor 4 homolog, mitochondrial-like.
      
 0.592
LOC115202656
Cytochrome c oxidase assembly factor 4 homolog, mitochondrial-like.
      
 0.592
LOC115164691
Probable palmitoyltransferase ZDHHC12.
      
 0.587
ENSSTUP00000102811
annotation not available
      
 0.587
zdhhc24
Zinc finger DHHC-type containing 24.
      
 0.581
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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