Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115202968B-cadherin-like. (891 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta-1.
   
 0.989
CTNNB1-2
Catenin beta-1-like.
   
 0.989
LOC115197121
Junction plakoglobin-like.
   
 0.974
LOC115208692
Junction plakoglobin-like.
   
 0.974
LOC115177790
Junction plakoglobin-like.
   
 0.974
LOC115171029
Junction plakoglobin-like.
   
 0.974
LOC115182075
E3 ubiquitin-protein ligase Mdm2-like.
    
 0.955
MDM2
MDM2 proto-oncogene.
    
 0.955
ENSSTUP00000038231
annotation not available
    
 0.954
ENSSTUP00000039932
Catenin (cadherin-associated protein), alpha 2.
    
 0.954
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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