Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115171368Heme oxygenase-like. (271 aa)    
Predicted Functional Partners:
ENSSTUP00000006147
Biliverdin reductase B.
    
 0.946
fech
Ferrochelatase.
    
 0.927
blvrb
Biliverdin reductase B.
    
 0.901
ENSSTUP00000081375
Biliverdin reductase A.
     
 0.890
blvra
Biliverdin reductase A.
     
 0.890
LOC115160449
Ferritin, lower subunit-like.
    
 0.877
LOC115204688
Hephaestin-like protein 1.
     
 0.865
LOC115155481
Nuclear factor erythroid 2-related factor 2-like.
    
 0.852
LOC115179289
Nuclear factor erythroid 2-related factor 2-like.
    
 0.852
LOC115160786
Nuclear factor erythroid 2-related factor 2-like.
    
 0.852
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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