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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115168607Zinc finger protein ubi-d4-like. (407 aa)    
Predicted Functional Partners:
smarcd2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2.
   
 0.930
ENSSTUP00000051487
AT rich interactive domain 2 (ARID, RFX-like).
    
 0.899
ARID2
AT-rich interaction domain 2.
    
 0.899
LOC115159988
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A.
   
 0.883
ENSSTUP00000052486
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b.
   
 0.883
ENSSTUP00000106970
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b.
   
 0.883
brd7
Bromodomain containing 7.
    
 0.870
ENSSTUP00000069414
Bromodomain containing 7.
    
 0.870
LOC115151526
Actin-like protein 6A.
   
 0.866
ENSSTUP00000063476
Actin-like 6A.
   
 0.866
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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