Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115203894Centrin-3. (167 aa)    
Predicted Functional Partners:
poc5
POC5 centriolar protein.
    
 
 0.973
xpc
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.953
ENSSTUP00000097757
SFI1 centrin binding protein.
    
 0.951
LOC115171279
Caltractin-like.
  
 
0.946
LOC115164685
Caltractin-like.
  
 
0.946
LOC115205149
Caltractin.
  
 
0.946
mcm3ap
Minichromosome maintenance complex component 3 associated protein.
    
 
 0.931
LOC115175974
Transcription and mRNA export factor ENY2-2.
   
 
 0.909
LOC115177366
Transcription and mRNA export factor ENY2-1.
   
 
 0.909
ift88
Intraflagellar transport 88.
    
 0.875
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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