Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115208037Transforming acidic coiled-coil-containing protein 1-like. (915 aa)    
Predicted Functional Partners:
LOC115205223
Malate synthase-like.
   
 
 0.868
LOC115167616
Cytoskeleton-associated protein 5-like.
    
 0.860
LOC115152347
Cytoskeleton-associated protein 5-A-like.
    
 0.860
ENSSTUP00000115715
Cytoskeleton associated protein 5.
    
 0.860
ENSSTUP00000112372
annotation not available
    
 
 0.859
nif3l1
NGG1 interacting factor 3 like 1.
    
   0.749
LOC115201067
Next to BRCA1 gene 1 protein-like.
    
 0.741
ENSSTUP00000049415
NBR1 autophagy cargo receptor b.
    
 0.741
LOC115171261
Next to BRCA1 gene 1 protein-like.
    
 0.741
LOC115158311
Next to BRCA1 gene 1 protein-like.
    
 0.741
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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