STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115208037Transforming acidic coiled-coil-containing protein 1-like. (915 aa)    
Predicted Functional Partners:
LOC115205223
Malate synthase-like.
   
 
 0.916
ENSSTUP00000112372
annotation not available
    
 
0.757
ENSSTUP00000033589
Extra spindle pole bodies like 1, separase.
    
 0.691
plekha1
Pleckstrin homology domain containing A1.
    
 0.689
FKBP14
FKBP prolyl isomerase 14.
    
 
 0.670
fkbp7
FKBP prolyl isomerase 7.
    
 
 0.657
LOC115162255
Transforming acidic coiled-coil-containing protein 3-like.
    
 
0.657
LOC115172540
Transforming acidic coiled-coil-containing protein 3-like.
    
 
0.657
LOC115167616
Cytoskeleton-associated protein 5-like.
    
 
 0.632
LOC115152347
Cytoskeleton-associated protein 5-A-like.
    
 
 0.632
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.