Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
LOC115196093Manganese-transporting ATPase 13A1-like. (1196 aa)    
Predicted Functional Partners:
ENSSTUP00000014071
annotation not available
   
 
 0.864
EMC1
ER membrane protein complex subunit 1.
   
 
 0.864
sec63
SEC63 homolog, protein translocation regulator.
   
 
 0.845
GET1
Tail-anchored protein insertion receptor WRB-like.
    
 
 0.834
LOC115148924
Tail-anchored protein insertion receptor WRB-like.
    
 
 0.834
LOC115163507
Tail-anchored protein insertion receptor WRB-like.
    
 
 0.834
DLK1
Delta like non-canonical Notch ligand 1.
    
  0.759
LOC115154277
Phosphoglycerate kinase-like.
    
 
 0.747
LOC115148808
Phosphoglycerate kinase.
    
 
 0.747
LOC115150803
Protein transport protein Sec61 subunit alpha.
  
 
 0.734
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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