Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115195811Charged multivesicular body protein 4c-like. (239 aa)    
Predicted Functional Partners:
LOC115164550
Charged multivesicular body protein 7-like.
    
 0.987
LOC115200095
Charged multivesicular body protein 7-like.
    
 0.987
ENSSTUP00000072212
Programmed cell death 6 interacting protein.
   
 0.980
ENSSTUP00000085666
Programmed cell death 6 interacting protein.
   
 0.980
LOC115152866
Vacuolar protein-sorting-associated protein 25-like.
    
 0.980
ENSSTUP00000039720
Vacuolar protein sorting 36 homolog.
    
 0.977
LOC115201031
Charged multivesicular body protein 2a.
   
 0.975
LOC115158731
Charged multivesicular body protein 2a-like.
   
 0.975
ENSSTUP00000007493
Charged multivesicular body protein 3.
   
 0.972
chmp3
Charged multivesicular body protein 3.
   
 0.972
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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