Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115153964Vesicle transport protein SEC20-like. (229 aa)    
Predicted Functional Partners:
use1
Unconventional SNARE in the ER 1.
    
 0.991
stx18
Syntaxin 18.
    
 0.982
LOC115150189
Syntaxin-18-like.
    
 0.982
LOC115192565
Vesicle-trafficking protein SEC22b-B-like.
    
 0.952
LOC115156672
Vesicle-trafficking protein SEC22b-B-like.
    
 0.952
LOC115170044
Vesicle-trafficking protein SEC22b-B-like.
    
 0.952
LOC115158314
Vesicle-trafficking protein SEC22b-B.
    
 0.952
ENSSTUP00000103287
BCL2 interacting protein 1a.
  
  
 
0.929
LOC115168147
Vesicle transport protein SEC20-like.
  
  
 
0.928
LOC115150071
Gamma-soluble NSF attachment protein-like.
    
  0.926
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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