Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000010091Zinc finger, matrin-type 5. (154 aa)    
Predicted Functional Partners:
rnpc3
RNA binding region (RNP1, RRM) containing 3.
   
 0.998
LOC115165358
Small nuclear ribonucleoprotein G.
   
 0.992
LOC115188439
Zinc finger CCHC-type and RNA-binding motif-containing protein 1-like.
    
 0.987
LOC115188440
Zinc finger CCHC-type and RNA-binding motif-containing protein 1-like.
    
 0.987
LOC115179437
U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like.
    
 0.980
LOC115176667
U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like.
    
 0.980
ENSSTUP00000038781
Small nuclear ribonucleoprotein 35 (U11/U12).
   
 0.972
LOC115150656
Small nuclear ribonucleoprotein E.
   
 0.966
LOC115150656-2
Small nuclear ribonucleoprotein E.
   
 0.966
LOC115198859
U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like.
   
 0.964
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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