Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000010210annotation not available (105 aa)    
Predicted Functional Partners:
ENSSTUP00000034214
Zinc finger, CCHC domain containing 8.
    
   0.888
ZCCHC8
Zinc finger CCHC domain-containing protein 8-like.
    
   0.888
slc4a1ap
Solute carrier family 4 member 1 adaptor protein.
   
   0.810
rsrc1
Arginine and serine rich coiled-coil 1.
    
 
 0.799
ENSSTUP00000081057
annotation not available
    
 
 0.799
LOC115149378
Exosome RNA helicase MTR4-like.
   
   0.775
ENSSTUP00000033277
Mtr4 exosome RNA helicase.
   
   0.775
mcm3ap
Minichromosome maintenance complex component 3 associated protein.
   
  
 0.766
LOC115206441
RNA-binding protein 7-like.
    
 
 0.754
LOC115163531
RNA-binding protein 7-like.
    
 
 0.754
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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