Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115154555E3 ubiquitin-protein ligase RNF128-like. (404 aa)    
Predicted Functional Partners:
LOC115156657
Peripherin-2-like.
    
 
 0.890
LOC115154696
Peripherin-2-like.
    
 
 0.890
LOC115200851
Peripherin-2-like.
    
 
 0.890
LOC115168112
Calcium-independent phospholipase A2-gamma-like.
      
 0.878
LOC115188454
Calcium-independent phospholipase A2-gamma-like.
      
 0.878
LOC115197616
Calcium-independent phospholipase A2-gamma-like.
      
 0.878
LOC115193914
Peripherin-2-like.
    
 
 0.873
LOC115153090
Peripherin-2-like.
    
 
 0.873
LOC115153972
POU domain, class 4, transcription factor 3-like.
      
 0.858
LOC115164743
Natterin-3-like.
      
 0.857
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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