Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
radxRPA1 related single stranded DNA binding protein, X-linked. (869 aa)    
Predicted Functional Partners:
ENSSTUP00000062356
mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli).
    
   0.857
SMARCAL1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1.
      
 0.703
brca2
BRCA2 DNA repair associated.
      
 0.679
DNA2
DNA replication helicase/nuclease 2.
      
 0.670
fbh1
F-box DNA helicase 1.
      
 0.662
exo1
Exonuclease 1.
      
 0.640
ENSSTUP00000076014
FA complementation group D2.
      
 0.637
ENSSTUP00000062488
annotation not available
      
 0.616
ENSSTUP00000098283
Zinc finger, RAN-binding domain containing 3.
      
 0.599
ENSSTUP00000098326
annotation not available
      
 0.599
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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