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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
radxRPA1 related single stranded DNA binding protein, X-linked. (869 aa)    
Predicted Functional Partners:
ENSSTUP00000062356
mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli).
    
   0.651
ENSSTUP00000082873
annotation not available
   
  
 0.548
SMARCAL1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1.
      
 0.543
fbh1
F-box DNA helicase 1.
      
 0.540
brca2
BRCA2 DNA repair associated.
      
 0.538
DNA2
DNA replication helicase/nuclease 2.
      
 0.499
exo1
Exonuclease 1.
   
  
 0.486
ints8
Integrator complex subunit 8.
      
 0.479
ENSSTUP00000076014
FA complementation group D2.
      
 0.463
ENSSTUP00000068935
annotation not available
      
 0.459
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.