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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115198037RING finger protein 175-like. (313 aa)    
Predicted Functional Partners:
LOC115166912
Vacuolar protein sorting-associated protein 33B.
   
    0.595
ENSSTUP00000111288
VPS33B late endosome and lysosome associated.
   
    0.595
LOC115153653
RING finger protein 151-like.
      
 0.546
exd3
Exonuclease 3'-5' domain containing 3.
      
 0.511
LOC115160607
Uncharacterized LOC115160607.
      
 0.511
ENSSTUP00000077227
Nuclear speckle splicing regulatory protein 1.
      
 0.493
LOC115151818
E3 ubiquitin-protein ligase RNF126-like.
      
 0.451
RNF126
E3 ubiquitin-protein ligase RNF126-like.
      
 0.451
LOC115157418
E3 ubiquitin-protein ligase RNF126-like.
      
 0.451
LOC115158224
E3 ubiquitin-protein ligase RNF126-like.
      
 0.451
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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