Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115156657Peripherin-2-like. (344 aa)    
Predicted Functional Partners:
LOC115154555
E3 ubiquitin-protein ligase RNF128-like.
    
 
 0.890
LOC115168112
Calcium-independent phospholipase A2-gamma-like.
      
 0.878
LOC115188454
Calcium-independent phospholipase A2-gamma-like.
      
 0.878
LOC115197616
Calcium-independent phospholipase A2-gamma-like.
      
 0.878
LOC115153972
POU domain, class 4, transcription factor 3-like.
      
 0.877
LOC115164743
Natterin-3-like.
      
 0.876
LOC115199896
Natterin-3-like.
      
 0.876
RHO
Rhodopsin-like.
   
  
 0.866
LOC115168451
Rhodopsin.
   
  
 0.811
ENSSTUP00000074349
annotation not available
   
  
 0.811
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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