Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC115167743Zinc finger protein SNAI2-like. (290 aa)    
Predicted Functional Partners:
ENSSTUP00000037412
Lysine (K)-specific demethylase 1a.
    
 0.736
ENSSTUP00000051089
Lysine (K)-specific demethylase 1a.
    
 0.736
LOC115202900
NEDD8-activating enzyme E1 regulatory subunit-like.
      
 0.694
ENSSTUP00000007114
annotation not available
    
 0.673
LOC115202968
B-cadherin-like.
    
 0.673
LOC115167390
B-cadherin-like.
    
 0.673
usp3
Ubiquitin specific peptidase 3.
    
   0.639
LOC115199224
DNA (cytosine-5)-methyltransferase 1-like.
    
 
 0.634
LOC115171244
DNA (cytosine-5)-methyltransferase 1-like.
    
 
 0.634
LOC115203084
Ubiquitin carboxyl-terminal hydrolase 10-like.
    
   0.633
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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