Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xrcc4X-ray repair cross complementing 4. (336 aa)    
Predicted Functional Partners:
lig4
DNA ligase 4.
   
 0.992
ENSSTUP00000092886
annotation not available
  
  
 
0.945
xrcc5
X-ray repair cross complementing 5.
    
 0.931
LOC115201316
X-ray repair cross-complementing protein 5-like.
    
 0.914
LOC115153578
X-ray repair cross-complementing protein 5-like.
    
 0.914
ENSSTUP00000040931
WD repeat domain 59.
    
 0.913
ENSSTUP00000026273
annotation not available
    
 0.905
kptn
Kaptin, actin binding protein.
    
 0.905
depdc5
DEP domain containing 5, GATOR1 subcomplex subunit.
    
 0.903
SZT2
SZT2 subunit of KICSTOR complex.
    
 0.882
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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