Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115202972RING finger protein 166-like. (241 aa)    
Predicted Functional Partners:
LOC115167805
Probable E3 ubiquitin-protein ligase DTX3.
    
 
 0.874
LOC115154315
polyubiquitin-C.
    
  0.743
ENSSTUP00000031566
annotation not available
    
  0.743
ENSSTUP00000105071
annotation not available
    
  0.743
chd1l
Chromodomain helicase DNA binding protein 1 like.
    
   0.709
LOC115170539
Zinc finger protein 653-like.
    
 0.694
LOC115201050
Zinc finger protein 653-like.
    
 0.694
LOC115166473
Zinc finger and BTB domain-containing protein 39-like.
    
 0.689
LOC115167894
Zinc finger and BTB domain-containing protein 39-like.
    
 0.689
znf276
Zinc finger protein 276.
    
 0.685
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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