Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115201052Vesicle-fusing ATPase-like. (744 aa)    
Predicted Functional Partners:
LOC115162096
Sec1 family domain-containing protein 1-like.
   
 0.958
scfd1
Sec1 family domain containing 1.
   
 0.958
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.939
LOC115150071
Gamma-soluble NSF attachment protein-like.
   
 0.933
LOC115170211
Gamma-soluble NSF attachment protein-like.
   
 0.933
LOC115195580
Gamma-soluble NSF attachment protein-like.
   
 0.933
LOC115174018
BET1 homolog.
    
 0.930
LOC115175526
BET1 homolog.
    
 0.930
LOC115201085
Vesicle transport through interaction with t-SNAREs homolog 1A-like.
   
 0.919
LOC115158049
Vesicle transport through interaction with t-SNAREs homolog 1A-like.
   
 0.919
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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