Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC115199654T-box transcription factor TBX3-like. (669 aa)    
Predicted Functional Partners:
LOC115200671
Mitogen-activated protein kinase 1-like.
    
  0.712
MAPK1
Mitogen-activated protein kinase 1.
    
  0.712
mapk7
Mitogen-activated protein kinase 7.
    
  0.712
LOC115170800
Mitogen-activated protein kinase 1-like.
    
  0.712
gata4
GATA binding protein 4.
    
 0.688
LOC115168139
Homeobox protein Nkx-2.5-like.
   
 0.659
LOC115205638
Homeobox protein Nkx-2.5-like.
   
 0.659
ENSSTUP00000020464
Mitogen-activated protein kinase 6.
    
  0.649
LOC115182360
Mitogen-activated protein kinase 6-like.
    
  0.649
ENSSTUP00000035779
Kinetochore associated 1.
      
 0.616
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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