Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115152307Protein LSM14 homolog A-like. (488 aa)    
Predicted Functional Partners:
ddx6
DEAD-box helicase 6.
   
 
 0.883
LOC115183280
Probable ATP-dependent RNA helicase ddx6.
   
 
 0.883
LOC115176101
Probable ATP-dependent RNA helicase ddx6.
   
 
 0.883
ENSSTUP00000092669
DEAD (Asp-Glu-Ala-Asp) box helicase 61.
   
 
 0.883
ENSSTUP00000113898
annotation not available
   
 
 0.883
LOC115208066
Eukaryotic translation initiation factor 4E transporter-like.
   
 
 0.877
EIF4ENIF1
Eukaryotic translation initiation factor 4E transporter-like.
   
 
 0.877
LOC115196796
Enhancer of mRNA-decapping protein 4-like.
    
 
 0.876
edc4
Enhancer of mRNA decapping 4.
    
 
 0.876
dcp2
Decapping mRNA 2.
    
 
 0.870
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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