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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115152307Protein LSM14 homolog A-like. (488 aa)    
Predicted Functional Partners:
dcp2
Decapping mRNA 2.
    
 
 0.949
LOC115208066
Eukaryotic translation initiation factor 4E transporter-like.
   
 
 0.940
EIF4ENIF1
Eukaryotic translation initiation factor 4E transporter-like.
   
 
 0.940
ddx6
DEAD-box helicase 6.
   
 
 0.927
LOC115183280
Probable ATP-dependent RNA helicase ddx6.
   
 
 0.927
LOC115176101
Probable ATP-dependent RNA helicase ddx6.
   
 
 0.927
ENSSTUP00000092669
DEAD (Asp-Glu-Ala-Asp) box helicase 61.
   
 
 0.927
ENSSTUP00000113898
annotation not available
   
 
 0.927
LOC115167063
Enhancer of mRNA-decapping protein 3-like.
    
 
 0.782
ENSSTUP00000033576
annotation not available
    
 
 0.782
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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