Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC115171509Choline transporter-like protein 1. (754 aa)    
Predicted Functional Partners:
LOC115155736
High-affinity choline transporter 1-like.
     
 0.759
LOC115183910
High-affinity choline transporter 1-like.
     
 0.759
LOC115183909
High-affinity choline transporter 1-like.
     
 0.759
LOC115163729
High-affinity choline transporter 1-like.
     
 0.759
ENSSTUP00000069978
annotation not available
     
 0.759
ENSSTUP00000070146
annotation not available
     
 0.759
SLC5A7
High-affinity choline transporter 1-like.
     
 0.759
LOC115199052
High-affinity choline transporter 1-like.
     
 0.759
LOC115192985
Solute carrier family 22 member 2-like.
     
 0.745
LOC115174820
Solute carrier family 22 member 2-like.
     
 0.745
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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