Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ddx24DEAD-box helicase 24. (929 aa)    
Predicted Functional Partners:
ENSSTUP00000064033
WD repeat domain 12.
   
 0.974
ddx56
DEAD-box helicase 56.
  
 
0.969
nop14
NOP14 nucleolar protein.
   
 0.968
noc2l
NOC2 like nucleolar associated transcriptional repressor.
   
 
 0.965
rsl1d1
Ribosomal L1 domain containing 1.
   
 
 0.964
LOC115192215
Probable rRNA-processing protein EBP2.
   
 0.963
EBNA1BP2
Probable rRNA-processing protein EBP2.
   
 0.963
LOC115159290
Pumilio homolog 3-like.
   
 
 0.960
ddx27
DEAD-box helicase 27.
  
 
0.958
ENSSTUP00000011860
annotation not available
   
 
 0.957
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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