Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
atg10Autophagy related 10. (279 aa)    
Predicted Functional Partners:
ENSSTUP00000000544
ATG12 autophagy related 12 homolog (S. cerevisiae).
    
 0.995
LOC115177056
Ubiquitin-like protein ATG12.
    
 0.995
atg7
Autophagy related 7.
    
 0.985
ATG5
Autophagy protein 5-like.
    
 0.980
ENSSTUP00000098761
ATG5 autophagy related 5 homolog (S. cerevisiae).
    
 0.980
LOC115206685
Autophagy-related protein 16-2-like.
    
 0.950
atg16l1
Autophagy related 16 like 1.
    
 0.950
ENSSTUP00000090279
ATG16 autophagy related 16-like 1 (S. cerevisiae).
    
 0.950
LOC115151842
Microtubule-associated proteins 1A/1B light chain 3B.
    
 0.798
LOC115196926
Microtubule-associated proteins 1A/1B light chain 3B-like.
    
 0.798
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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