Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSSTUP00000010474LIM homeobox transcription factor 1, alpha-like. (403 aa)    
Predicted Functional Partners:
LOC115205097
LIM domain-binding protein 2.
    
 0.758
LOC115152982
LIM domain-binding protein 1-like.
    
 0.758
ENSSTUP00000058689
LIM domain binding 2a.
    
 0.758
LOC115194038
LIM domain-binding protein 1-like.
    
 0.758
LOC115147536
LIM domain-binding protein 1.
    
 0.758
idi1
Isopentenyl-diphosphate delta isomerase 1.
    
   0.709
nphs2
NPHS2 stomatin family member, podocin.
    
 
 0.658
TBX20
T-box transcription factor TBX20.
    
 0.648
LOC115176803
T-box transcription factor TBX20-like.
    
 0.648
nme8
NME/NM23 family member 8.
    
   0.631
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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