Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115153010PDZ and LIM domain protein 1-like. (318 aa)    
Predicted Functional Partners:
LOC115154004
PDZ and LIM domain protein 4-like.
     
 
0.924
LOC115148546
PDZ and LIM domain protein 4-like.
     
 
0.924
LOC115200123
PDZ and LIM domain protein 2-like.
     
 
0.912
LOC115164523
PDZ and LIM domain protein 2-like.
     
 
0.912
LOC115202136
PDZ and LIM domain protein 3-like.
  
  
 
0.911
pdlim3
PDZ and LIM domain 3.
  
  
 
0.911
LOC115191896
PDZ and LIM domain protein 3-like.
  
  
 
0.911
LOC115166358
PDZ and LIM domain protein 7-like.
   
 
0.801
ENSSTUP00000085605
PDZ and LIM domain 7.
   
 
 0.801
LOC115205770
PDZ and LIM domain protein 7-like.
   
 
0.801
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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