STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115153139Transmembrane protein 56-B-like. (262 aa)    
Predicted Functional Partners:
LOC115199132
Leucine-rich repeat and guanylate kinase domain-containing protein-like.
    
 
 0.710
ENSSTUP00000113714
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.710
ccdc189
Coiled-coil domain containing 189.
    
 
 0.642
cfap74
Cilia and flagella associated protein 74.
    
 
 0.600
CFAP69
Cilia and flagella associated protein 69.
    
   0.599
ENSSTUP00000063642
annotation not available
    
 
 0.593
ENSSTUP00000088061
annotation not available
    
 
 0.593
ENSSTUP00000038941
annotation not available
    
 
 0.551
cfap221
Cilia and flagella associated protein 221.
    
 
 0.551
LOC115176355
DNA-directed RNA polymerase III subunit RPC3-like.
    
   0.545
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.